CELLPROFILER 2.2.0 HOW TO
CELLPROFILER 2.2.0 LICENSE

CELLPROFILER 2.2.0 HOW TO

Examples of software are compilers (C, C++, F90) and software for electronic structure calculations, GAUSSIAN and GAMESS-US.įor information on how to use and write MPI and OpenMP parallel programs on UPPMAX clusters, see the tutorial.įor support, please email. CellProfiler 2.2.0 (Kamentsky et al., 2011) was used to analyze morphological and staining characteristics of cell nuclei that were positively stained for.

CELLPROFILER 2.2.0 LICENSE

The software is mainly made available on UPPMAX computer systems, but also on other computer systems within Uppsala University, when license agreements allows it. However, it is not straightforward to run a batch analysis. CellProfiler is best run using a physical core for each process, so we have 4 28 112 cores available across 4 nodes. It is flexible enough to support running large analysis projects across multiple nodes in the Nucleus cluster, to speed up time to completion. UPPMAX buys, supports and updates software for scientific computing of general interest for researchers. CellProfiler has a batch processing feature that can be used to run jobs on a cluster independent of the graphical interface. Notice: Before you can load any bioinformatics software, you will have to issue the command 'module load bioinfo-tools'. TMZ + DXM 89.9 10.5 95.3 10.9 444.6 33.6 250.9 34.1 202.7 25.1 Average fluorescence intensity calculated using Cell Profiler 2.2.0 software. More information about UPPMAX module system. List available modules with 'module avail'. Depending on which cluster you're logged in to you will have access to different modules/software packages.

These are loaded with the ' module load DESIRED_MODULE/ VERSION' command. Below you will find a list of software that's available on our resources via our module system.

Cellprofiler 2.2.0